| YEAR |
TITLE |
| 2023 |
Dynamozones are the most obvious sign of the evolution
of conformational dynamics in HIV-1 protease
M Rahimi, M Taghdir, F Abasi Joozdani
Scientific Reports 13 (1), 14179
|
| 2023 |
Molecular insights into the behavior of the allosteric and ATP-competitive
inhibitors in interaction with AKT1 protein: A molecular dynamics study
MR Amiran, M Taghdir, FA Joozdani
International Journal of Biological Macromolecules 242, 124853
|
| 2023 |
Investigation of the inhibitory behavior of XFE and mitoxantrone molecules
in interaction with AKT1 protein: a molecular dynamics simulation study
MR Amiran, M Taghdir, F Abasi Joozdani
Journal of Molecular Modeling 29 (5), 1-10
|
| 2022 |
Evaluation of transport mechanism of ascorbic acid through cyclic peptide-based
nanotubes: A molecular dynamics study
FA Joozdani, M Taghdir
Journal of Molecular Liquids 349, 118136
|
| 2022 |
Design and simulation of the liposomal model by using a coarse-grained molecular
dynamics approach towards drug delivery goals
J Parchekani, A Allahverdi, M Taghdir, H Naderi-Manesh
Scientific Reports 12 (1), 1-15
|
| 2021 |
Investigation of ANP peptide inhibitory potential for targeting Wnt-?catenin
signalling through FZD7
N Dehghanbanadaki, M Taghdir, R Hassan Sajedi, H Naderi-Manesh
Modares Journal of Biotechnology 12 (3), 69-85
|
| 2021 |
Thermostability of Ctenophore and Coelenterate Ca2+-Regulated
Apo-photoproteins: A Comparative Study
R Nemati, M Molakarimi, A Mohseni, M Taghdir, K Khalifeh, R H. Sajedi
ACS Chemical Biology 16 (8), 1538-1545
|
| 2021 |
A nanodisc structure design from sphingomyelin of chicken egg phospholipid
(DPSM) and cholesterol (CHOL) and its formation study: a coarse-grained
molecular dynamics simulation
J Parchekani Choozaki, M Taghdir
Cellular and Molecular Research (Iranian Journal of Biology) 34 (2),
263-275
|
| 2021 |
A molecular dynamics investigation on transporting mechanism of glucose
through a cyclic peptide nanotube
FA Joozdani, M Taghdir
Journal of Biomolecular Structure and Dynamics 39 (6), 2230-2241
|
| 2021 |
An experimental investigation on the influence of various buffer concentrations,
osmolytes and gold nanoparticles on lysozyme: spectroscopic and calorimetric
study
S Mohammadi, K Khajeh, M Taghdir, B Ranjbar
International Journal of Biological Macromolecules 172, 162-169
|
| 2021 |
Investigation of Atrial Natriuretic Peptide as A Competitive Inhibitory
Candidate Against Wnt/?-Catenin Signalling: A Molecular Dynamics Approach
N Dehghanbanadaki, M Taghdir, H Naderi-Manesh
International Journal of Peptide Research and Therapeutics 27, 353-363
|
| 2021 |
The trypsin inhibitor pro-peptide induces toxic effects in Indianmeal moth,
Plodia interpunctella
SA Hemmati, Z Takalloo, M Taghdir, M Mehrabadi, S Balalaei, ...
Pesticide Biochemistry and Physiology 171, 104730
|
| 2020 |
Synthesis of nanoliposomes containing green tea Catechin and doxorubicin
to evaluate its toxicity on breast cancer cells
M Tohidlou, S Sadeghi Mohammadi, Z Vaezi, M Taghdir, ...
Modares Journal of Biotechnology 11 (4), 29-42
|
| 2020 |
The physicochemical properties role of a functionalized alkyl-peptide in
nanofibre formation and neural progenitor cells viability and survival
H Mehralitabar, M Taghdir, R Mobasseri, H Naderi-Manesh
Polymer Testing 91, 106829
|
| 2020 |
Investigating the effect of solvent type on the formation of daunoxome liposome
(DSPC-CHOL) using coarse-grained molecular dynamics simulation
J Parchekani Choozaki, M Taghdir
Cellular and Molecular Research (Iranian Journal of Biology) 33 (3),
432-443
|
| 2020 |
Structural Insight into the role of Inhibitor Peptide derived from Tumstatin-Integrin
Complex in Inhibitory Mechanism: A Molecular Dynamics Simulations Study
M Taghdir
Modares Journal of Biotechnology 11 (2), 137-144
|
| 2020 |
Study of the Effect of Multi-Walled Carbon Nanotube on Human Hepcidin 20
by Using Molecular Dynamics Simulation
R Rasoolzadeh, F Mehrnejad, M Taghdir, P Yaghmaei
Modares Journal of Biotechnology 11 (1), 103-108
|
| 2020 |
Tuning the active site dynamic properties and substrate affinity in Pseudomonas
aeruginosa elastase by Cys270?Cys297 disulfide bond
Z Jahangirizadeh, M Taghdir
Chemical Physics 531, 110615
|
| 2020 |
Structural Insight into the Role of Inhibitory Peptide Derived from Tumstatin-Integrin
Complex in Inhibitory Mechanism: A Molecular Dynamics Simulations Study
M Ghorbani, M Taghdir
JOURNAL OF BIOTECHNOLOGY 11 (1), 137-144
|
| 2019 |
Spectroscopic Studies on the Interaction of Gold Nanoparticles with Lysozyme
S Mohammadi, K Khajeh, M Taghdir, N Farahani, B Ranjbar
Biomacromolecular Journal 5 (2), 140-151
|
| 2019 |
A combination of bioactive and nonbioactive alkyl-peptides form a more stable
nanofiber structure for differentiating neural stem cells: a molecular dynamics
simulation survey
H Mehralitabar, M Taghdir, H Naderi-Manesh
Journal of Biomolecular Structure and Dynamics 37 (13), 3434-3444
|
| 2019 |
Investigation the Effect of Cholesterol on the Formation and Stability of
the Liposomes using Coarse-Grained Molecular Dynamics Simulations
J Parchekani Choozaki, M Taghdir
Modares Journal of Biotechnology 10 (2), 241-246
|
| 2019 |
Effects of single-walled carbon nanotube on the conformation of human hepcidin:
molecular dynamics simulation and binding free energy calculations
R Rasoolzadeh, F Mehrnejad, M Taghdir, P Yaghmaei
Journal of Biomolecular Structure and Dynamics 37 (8), 2125-2132
|
| 2019 |
Reaction mechanism of the bioluminescent protein mnemiopsin1 revealed by
X-ray crystallography and QM/MM simulations
M Molakarimi, MA Gorman, A Mohseni, Z Pashandi, M Taghdir, ...
Journal of Biological Chemistry 294 (1), 20-27
|
| 2018 |
Exploring single-domain antibody thermostability by molecular dynamics simulation
A Mohseni, M Molakarimi, M Taghdir, RH Sajedi, S Hasannia
Journal of Biomolecular Structure and Dynamics
|
| 2018 |
Theoretical investigation of interaction energies between carbon and BN
nanotubes with human hepcidin peptides: Insights into the semi empirical
and Monte Carlo methods
R Rasoolzadeh, F Mehrnejad, M Taghdir, P Yaghmaei
BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY 8 (5), 3594-3601
|
| 2018 |
Structural and functional consequences of EF-hand I recovery in mnemiopsin
2
V Jafarian, RH Sajedi, S Hosseinkhani, R Sariri, M Taghdir, K Khalifeh,
...
International journal of biological macromolecules 118, 2006-2013
|
| 2018 |
Molecular cloning, prokaryotic expression, purification, structural studies
and functional implications of Heat Shock Protein 70 (Hsp70) from Rutilus
frisii kutum
Z Jahangirizadeh, H Ghafouri, RH Sajedi, S Sarikhan, M Taghdir, R Sariri
International journal of biological macromolecules 108, 798-807
|
| 2018 |
Understanding the inhibitory mechanism of BIT225 drug against p7 viroporin
using computational study
E Behmard, P Abdolmaleki, M Taghdir
Biophysical chemistry 233, 47-54
|
| 2018 |
Probable Binding Sites of Mesd and Its Peptide Derived from? Carboxyl Terminal
on LRP6 First and Second Beta-Propeller? Domains; A Structural Approach
in Drug Design
M Taghdir, N Dehghan Banadaki
Modares Journal of Biotechnology 9 (1), 47-52
|
| 2018 |
Renin inhibition by soyasaponin I: A potent native anti-hypertensive compound
Z Tavassoli, M Taghdir, B Ranjbar
Journal of Biomolecular Structure and Dynamics 36 (1), 166-176
|
| 2018 |
The relationship of angle between N-and C-terminal domains and the activity
of thermolysin and elastase
A VARASTEH, SM ASGHARI, M TAGHDIR, MR AGHAMAALI
JOURNAL OF MOLECULAR AND CELLULAR RESEARCH (IRANIAN JOURNAL OF BIOLOGY)
31 ?
|
| 2018 |
Renin inhibition by soyasaponin I: a potent native anti-hypertensive compound
(vol 36, pg 166, 2017)
Z Tavassoli, M Taghdir, R Ranjbar
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 36 (1), 278-278
|
| 2017 |
Biochemical characterization and structural analysis of trypsin from
Plodia interpunctella midgut: implication of determinants in extremely
alkaline pH activity profile
SA Hemmati, RH Sajedi, S Moharramipour, M Taghdir, H Rahmani, ...
Physiological Entomology 42 (4), 307-318
|
| 2017 |
Molecular dynamics investigation on structural and transport properties
of p7 ion channel
E Behmard, P Abdolmaleki, M Taghdir
Journal of Biomolecular Structure and Dynamics 35 (12), 2725-2735
|
| 2017 |
Photoinactivation related dynamics of ctenophore photoproteins: Insights
from molecular dynamics simulation under electric-field
Z Pashandi, M Molakarimi, A Mohseni, RH Sajedi, M Taghdir, ...
Biochemical and biophysical research communications 490 (2), 265-270
|
| 2017 |
QM/MM simulations provide insight into the mechanism of bioluminescence
triggering in ctenophore photoproteins
M Molakarimi, A Mohseni, M Taghdir, Z Pashandi, MA Gorman, ...
Plos one 12 (8), e0182317
|
| 2017 |
Ca2+ binding and conformational switch of the photoprotein mnemiopsin
S Tarahomi, RH Sajedi, H Rahmani, B Ranjbar, M Taghdir
Protein and Peptide Letters 24 (6), 476-482
|
| 2016 |
Is unphosphorylated Rex, as multifunctional protein of HTLV-1, a fully intrinsically
disordered protein? An in silico study
M Kheirabadi, M Taghdir
Biochemistry and Biophysics Reports 8, 14-22
|
| 2016 |
Light induced structural changes of the photoprotein mnemiopsin: characterization
and contribution in photoinactivation
Z Pashandi, M Molakarimi, RH Sajedi, M Taghdir, H Naderi-Manesh
Journal of Photochemistry and Photobiology B: Biology 165, 133-140
|
| 2016 |
The relevance of low-affinity Ca-binding sites to the structure, stability
and kinetic properties of thermolysin
SM Asghari, M Isazadeh, M Taghdir
Journal of the Iranian Chemical Society 13, 1887-1894
|
| 2016 |
Purification and biochemical characterization of a trypsin from the midgut
of Plodia interpunctella
SA Hemmati, S Moharramipour, RH Sajedi, M Taghdir, M Mehrabadi, ...
|
| 2016 |
Prediction and structural analysis of a trypsin from the midgut of Plodia
interpunctella
SA Hemmati, S Moharramipour, RH Sajedi, M Taghdir, M Mehrabadi, ...
|
| 2016 |
Design and synthesis of self-assembled peptide based on three dimensional
nano hydrogels for soft tissue engineering
E Roshani Yasaghi, M Taghdir, MA Mohammad Ali Shokrgozar
Cellular and Molecular Research (Iranian Journal of Biology) 28 (4),
524-538
|
| 2016 |
THE INVESTIGATION OF MESD AND DKK1 BINDING SITES ON LRP6 DOMAINS: A NEW
APPROACH TO ANTI-CANCER PROTEIN DESIGN
BN DEHGHAN, M TAGHDIR
|
| 2015 |
Engineering of a disulfide loop instead of a Zn binding loop restores the
anti-proliferative, anti-angiogenic and anti-tumor activities of the N-terminal
fragment of endostatin ?
R Chamani, SM Asghari, AM Alizadeh, S Eskandari, K Mansouri, ...
Vascular pharmacology 72, 73-82
|
| 2015 |
Directed improvement of i-Photina bioluminescence properties, an efficient
calcium-regulated photoprotein
F Ahmadi, R Sajedi, A Mahdavi, M Zeinoddini, M Taghdir
Biomacromolecular Journal 1 (1), 80-92
|
| 2015 |
A conformation-based phage-display panning to screen neutralizing anti-VEGF
VHHs with VEGFR2 mimicry behavior
SS Shahangian, RH Sajedi, S Hasannia, S Jalili, M Mohammadi, ...
International journal of biological macromolecules 77, 222-234
|
| 2015 |
Hyperactive Arg39Lys mutated mnemiopsin: implication of positively charged
residue in chromophore binding cavity
A Mahdavi, RH Sajedi, S Hosseinkhani, M Taghdir
Photochemical & Photobiological Sciences 14, 792-800
|
| 2014 |
Construction of a single domain antibody against the receptor binding domain
of VEGF with the ability of binding to its critical functional region
SS Shahangian, S Jalili, A Mohseni, R Hassan Sajedi, S Hasannia, ...
Modares Journal of Biotechnology 5 (1), 70-80
|
| 2014 |
Study of orientation and penetration of LAH4 into lipid bilayer membranes:
pH and composition dependence
M Islami, F Mehrnejad, F Doustdar, M Alimohammadi, M Khadem?Maaref,
...
Chemical Biology & Drug Design 84 (2), 242-252
|
| 2014 |
The role of some amino acid residues in coelenterazine binding site of mnemiopsin
compared to coelenterate photoproteins
M MOLAKARIMI, SR HASAN, M TAGHDIR, SM ASGHARI
JOURNAL OF BIOTECHNOLOGY 5 (1), 0-0
|
| 2014 |
Investigation of Probable MESD Binding Sites on LRP6 Domains
N Dehghan, M Taghdir, Z Jabbari
|
| 2014 |
THE EFFECT OF CHARGE REPULSION ON THE STRUCTURE AND FUNCTION OF AN ANTICANCER
PEPTIDE DERIVED FROM ENDOSTATIN
R CHAMANI, SM ASGHARI, ALIM ALIZADEH, M TAGHDIR
MOLECULAR BIOLOGY RESEARCH COMMUNICATIONS 3 (1), 115-115
|
| 2014 |
THE INVESTIGATION OF LOCALIZATION OF 2-HYDROPEROXY COELENTERAZINE IN CETENOPHORE
PHOTOPROTEINS: A MOLECULAR DYNAMICS SIMULATION
M MOLAKARIMI, M TAGHDIR, A MOHSENI, SR HASAN, MH NADERI
MOLECULAR BIOLOGY RESEARCH COMMUNICATIONS 3 (1), 218-218
|
| 2013 |
Substrate preference of a Geobacillus maltogenic amylase: a kinetic and
thermodynamic analysis
S Nasrollahi, L Golalizadeh, RH Sajedi, M Taghdir, SM Asghari, M Rassa
International journal of biological macromolecules 60, 1-9
|
| 2013 |
Investigating the Role of EF-hand I on the Function of Photoprotein Mnemiopsin
From Ctenophore Mnemiopsis Leidyi Using Site-directed Mutagenesis
V Jafarian, R Sariri, S Hosseinkhani, RH Sajedi, M Taghdir, S Hassannia
1st Tabriz International Life Science Conference and 12th Iran Biophysical
?
|
| 2013 |
The investigation of functional sequence and structural features in anticancer
endostatin fragments
SA Jafaripour, M Taghdir, SM Asghari
1st Tabriz International Life Science Conference and 12th Iran Biophysical
?
|
| 2013 |
Site-directed mutagenesis of photoprotein mnemiopsin: implication of some
conserved residues in bioluminescence properties
A Mahdavi, RH Sajedi, S Hosseinkhani, M Taghdirc, R Sariri
Photochemical & Photobiological Sciences 12, 467-478
|
| 2013 |
The effect of calcium on stability of Thermolysin
ZM ESAZADE, SM Asghari, M Taghdir, AA VARASTE, DE OSARE
JOURNAL OF BIOTECHNOLOGY 4 (1), 85-92
|
| 2012 |
Biochemical Characterization of Elastase from Pseodomonas aeruginosa Strain
PTCC1430
H Rahmani, SM Asghari, S Ebrahimi, A Sadr-e-Momtaz, M Taghdir
New Cellular and Molecular Biotechnology Journal 2 (8), 73-77
|
| 2012 |
Investigation of mechanistic influence of mutation D117G in aequorin from
aequorea Victoria: A molecular dynamics simulation study
S Asfiaei, A Mohseni, M Taghdir
First International Conference on Biophysical Chemistry
|
| 2012 |
Structural analysis of new designed antiangiogenic endostatin peptides based
on structural dynamics properties and docking energy landscapes
S Eskandari, R Chamani, A Mohseni, M Taghdir, S mohsen Asghari
First International Conference on Biophysical Chemistry
|
| 2012 |
Study of Interactions between Antimicrobial Peptide LAH4 and Model Membranes
M Eslami, F Mehrnejad, M Taghdir, M Khadem-Maaref
First International Conference on Biophysical Chemistry
|
| 2012 |
Studies on the anti-tumor activity of an endostatin fragment
R Chamani, S Eskandari, M Asghari, M Taghdir
First International Conference on Biophysical Chemistry
|
| 2012 |
Construction of an engineered alpha 1-antitrypsin with inhibitory activity
based on theoretical studies
ED Sangachini, S Hasannia, M Taghdir, N Pirooznia, KK Ghadicholaei
Electronic Journal of Biotechnology 15 (2), 8-8
|
| 2012 |
Potential of Synthetic Histidine-Rich Antimicrobial Peptide as Agent Cancer
Therapy: Molecular Dynamics Simulation Study
M Islami, F Mehrnejad, M Taghdir, MK Maaref
|
| 2012 |
Identification of RNA-binding sites in artemin based on docking energy landscapes
and molecular dynamics simulation
B Rasti, SS Shahangian, M Taghdir, S Hasannia, SR HASAN
IRANIAN JOURNAL OF BIOTECHNOLOGY 10 (1), 8-15
|
| 2011 |
Cloning, Sequencing, Expression and Structural Investigation of Mnemiopsin
from Mnemiopsis leidyi: An Attempt Toward Understanding Ca2+-Regulated
?
MR Aghamaali, V Jafarian, R Sariri, M Molakarimi, B Rasti, M Taghdir,
...
The protein journal 30, 566-574
|
| 2011 |
An analysis of temperature adaptation in cold active, mesophilic and thermophilic
Bacillus ?-amylases
A Mahdavi, RH Sajedi, SM Asghari, M Taghdir, M Rassa
International journal of biological macromolecules 49 (5), 1038-1045
|
| 2011 |
Artemin as an efficient molecular chaperone
SS Shahangian, B Rasti, RH Sajedi, R Khodarahmi, M Taghdir, B Ranjbar
The protein journal 30, 549-557
|
| 2011 |
Cloning, Sequencing, Expression and Structural Investigation of Mnemiopsin
from Mnemiopsis leidyi: An Attempt Toward Understanding Ca2+-Regulated
?
MR Aghamaali, V Jafarian, R Sariri, M Molakarimi, B Rasti, M Taghdir,
...
The protein journal 30, 566-574
|
| 2011 |
The construction of chimeric T-cell receptor with spacer base of modeling
study of VHH and MUC1 interaction
N Pirooznia, S Hasannia, M Taghdir, F Rahbarizadeh, M Eskandani
Journal of Biomedicine and Biotechnology 2011
|
| 2011 |
Deletion of extra C-terminal segment and its effect on the function and
structure of artemin
F Shirzad, RH Sajedi, SS Shahangian, B Rasti, B Mosadegh, M Taghdir,
...
International journal of biological macromolecules 49 (3), 311-316
|
| 2011 |
A unique EF-hand motif in mnemiopsin photoprotein from Mnemiopsis leidyi:
Implication for its low calcium sensitivity
V Jafarian, R Sariri, S Hosseinkhani, MR Aghamaali, RH Sajedi, ...
Biochemical and biophysical research communications 413 (2), 164-170
|
| 2011 |
Study of F149S mutation and the mechanism of its effect on light emission
property in aequorin
A Mohseni, M Molakarimi, M Taghdir
Clinical Biochemistry 13 (44), S249
|
| 2011 |
Functional study of mnemiopsin photoprotein using site directed mutagenesis
Z Jahani, RH Sajedi, M Molakarimi, A Mahdavi, S Hosseinkhani, ...
Clinical Biochemistry 13 (44), S91-S92
|
| 2011 |
Engineering of a Ca-binding surface region in a Zn-metalloprotease: structural
and enzymatic analysis
N Asadi, H Rahmani, M Asghari, M Taghdir, HR Sajedi
Clinical Biochemistry 13 (44), S92
|
| 2010 |
Remarkable improvements of a neutral protease activity and stability share
the same structural origins
SM Asghari, M Pazhang, S Ehtesham, HR Karbalaei-Heidari, M Taghdir,
...
Protein Engineering, Design & Selection 23 (8), 599-606
|
| 2009 |
Sequence and structural analysis of artemin based on ferritin: A comparative
study
B Rasti, SS Shahangian, RH Sajedi, M Taghdir, S Hasannia, B Ranjbar
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1794 (10),
1407-1413
|
| 2009 |
Remarkable improvements of enzyme activity and stability share the same
structural origins
K Khajeh, M Asghari, M Pazhang, S Ehtesham, HR Karbalaei-Heidari, ...
New Biotechnology, S142
|
| 2007 |
Nucleotide sequence, structural investigation and homology modeling studies
of a Ca2+-independent ?-amylase with acidic pH-profile
RH Sajedi, M Taghdir, H Naderi-Manesh, K Khajeh, B Ranjbar
J. Biochem. Mol. Biol 40 (3), 315-324
|
| 2006 |
Adjusting force distributions in functional site of scorpion toxin BMK M1
by cooperative effect of disulfide bonds
M Taghdir, H Naderi-Manesh
Biochemical and biophysical research communications 351 (4), 1037-1042
|
| 2006 |
cDNA cloning, sequence analysis and molecular modeling of a new peptide
from the scorpion Buthotus saulcyi venom
M Nikkhah, H Naderi-Manesh, M Taghdir, M Talebzadeh, ...
BMB Reports 39 (3), 284-291
|
| |
Investigating the effect of solvent type on the formation of Epaxal liposome
(DOPC-DOPE) using coarse-grained molecular dynamics simulation
M Taghdir
|
| |
The design of a new MESD-derived peptide with anti-cancer properties
B Davaeil, M Taghdir
|
| |
The investigation of Mesd and dkk1 binding sites on LRP6 domains: a new
approach to anti-cancer protein design
ND Banadaki, M Taghdir
|
| |
S. Mohsen Asghari, Mohsen Isazadeh &
M Taghdir
|
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