| YEAR |
TITLE |
| 2023 |
DNA sequencing via molecular dynamics simulation with functionalized
graphene nanopore
MM Mohammadi, O Bavi, Y Jamali
Journal of Molecular Graphics and Modelling 122, 108467
|
| 2023 |
Criticality and partial synchronization analysis in Wilson-Cowan
and Jansen-Rit neural mass models
S Kazemi, AA Farokhniaee, Y Jamali
bioRxiv, 2023.10. 03.560644
|
| 2023 |
Omicron vs. the Rest: Assessing the Competitive Dynamics and
Coinfection Scenarios of COVID-19 Strains on a Social Network
H Jebraeilian, Y Jamali
medRxiv, 2023.06. 13.23291332
|
| 2023 |
Nasal airflow promotes default mode network activity
M Salimi, F Ayene, T Parsazadegan, M Nazari, Y Jamali, MR Raoufy
Respiratory Physiology & Neurobiology 307, 103981
|
| 2022 |
The trend of disruption in the functional brain network topology of
Alzheimer?s disease
A Fathian, Y Jamali*, MR Raoufy
scientific reports 12 (14998)
|
| 2022 |
A Computational Approach to Homans Social Exchange Theory
T Enayat, MM Ardebili, RR Kivi, B Amjadi, Y Jamali
Physica A: Statistical Mechanics and its Applications 597, 127263
|
| 2022 |
On the influence of input triggering on the dynamics of the Jansen-Rit
oscillators network
S Kazemia, Y Jamali
|
| 2022 |
Phase synchronization and measure of criticality in a network of neural
mass models
S Kazemi, Y Jamali
Scientific Reports 12 (1), 1-18
|
| 2021 |
Are the Theories of Evolution, Multiverse, and the Inexistence of Universe
Starting Point, the Product of Modern Science? Causality and Chance
in Modern and Ancient Science
Y Jamali
Journal of Philosophical Investigations 15 (37), 70-99
|
| 2021 |
Are the Theories of Evolution, Multiverse, and the Inexistence of Universe
Starting Point, the Product of Modern Science? Causality and Chance
in Modern and Ancient Science
Y Jamali
Journal of Philosophical Investigations (university of Tabriz) 15
(37), 70-99
|
| 2021 |
In-vitro, in-vivo, and in-silico assessment of radical scavenging and
cytotoxic activities of Oliveria decumbens essential oil and its main
components
T Jamali, G Kavoosi, Y Jamali, S Mortezazadeh, SK Ardestani
Scientific reports 11 (1), 1-19
|
| 2021 |
The effects of beta-cell mass and function, intercellular coupling,
and islet synchrony on Ca 2 + dynamics
M Saadati, Y Jamali
Scientific reports 11 (1), 1-14
|
| 2021 |
Mechanical properties of ester-and ether-DPhPC bilayers: A molecular
dynamics study
A Rasouli, Y Jamali, E Tajkhorshid, O Bavi, HN Pishkenari
Journal of the mechanical behavior of biomedical materials 117,
104386
|
| 2021 |
Phase synchronization and criticality in a network of neural mass models
S Kazemi, Y Jamali
|
| 2020 |
The effects of beta-cell mass and function, intercellular coupling,
and islet synchrony on dynamics
M Saadati, Y Jamali
|
| 2020 |
Martensitic transformation in stoichiometric NiMn and Ni?Mn-X alloys:
A first principles study
MR Niazi, S Sanjabi, Y Jamali, R Miresmaeili
Journal of Alloys and Compounds 845, 155978
|
| 2020 |
The effects of beta-cell mass and function, intercellular coupling,
and islet synchrony on dynamics in patients with Type 2 diabetes
mellitus
M Saadati, Y Jamali
arXiv e-prints, arXiv: 2012.10699
|
| 2020 |
Simulation of the L_α lipid phase behavior using systematic coarse-graining
of dioleoylphosphatidylethanolamine molecule
S Mortezazadeh, Y Jamali, H Naderimanesh
Cellular and Molecular Researches (Iranian Journal of Biology) 33
(3), 325-336
|
| 2020 |
An investigation into colour combination in paintings via graph theory
SJ Vangah, Y Jamali, M Jamali
Journal of Complex Networks 8 (4), cnz034
|
| 2020 |
Modified Bohmian quantum potential due to the second quantization of
Schrodinger equation
M Jamali, M Golshani, Y Jamali
|
| 2019 |
A proposed mechanism for mind-brain interaction using extended Bohmian
quantum mechanics in Avicennas monotheistic perspective
M Jamali, M Golshani, Y Jamali
Heliyon 5 (7), e02130
|
| 2019 |
Avicenna?s ideas and arguments about mind and brain interaction
M Jamali, M Golshani, Y Jamali
Preprints
|
| 2019 |
How the human mind affects its related brain? A mechanism for this influence,
using an extended Bohmian QM in Avicenna?s monotheistic perspective
M Jamali, M Golshani, Y Jamali
Preprints
|
| 2019 |
Ab initio study of the effect of thickness and epitaxial strain on the
magnetic structure of NiMn freestanding films
MR Niazi, S Sanjabi, Y Jamali
Physics Letters A 383 (14), 1660-1665
|
| 2019 |
A new method of brain stimulation at ultra-high frequency
Y Jamali, M Jamali, M Golshani
|
| 2019 |
Theory of cyborg: a new approach to fish locomotion control
M Jamali, Y Jamali, M Golshani
|
| 2019 |
Implicit solvent systematic coarse-graining of dioleoylphosphatidylethanolamine
lipids: From the inverted hexagonal to the bilayer structure
S Mortezazadeh, Y Jamali, H Naderi-Manesh, AP Lyubartsev
PloS one 14 (4), e0214673
|
| 2019 |
On the influence of structural connectivity on the correlation patterns
and network synchronization
PS Nazemi, Y Jamali
Frontiers in computational neuroscience 12, 105
|
| 2019 |
The concepts and applications of fractional order differential calculus
in modeling of viscoelastic systems: a primer
MA Matlob, Y Jamali
Critical Reviews? in Biomedical Engineering 47 (4)
|
| 2018 |
Simulation of the effect of an external GHz electric field on the potential
energy profile of Ca2+ ions in the selectivity filter of
the CaVAb channel
J Adiban, Y Jamali, H Rafii‐Tabar
Proteins: Structure, Function, and Bioinformatics 86 (4), 414-422
|
| 2017 |
Modeling ion permeation through a bacterial voltage-gated calcium channel
Ca V Ab using molecular dynamics simulations
J Adiban, Y Jamali, H Rafii-Tabar
Molecular BioSystems 13 (1), 208-214
|
| 2017 |
Nanomechanical properties of MscL alpha helices: A steered molecular
dynamics study
YJ N. Bavi, O. Bavi, M. Vossoughi, R. Naghdabadi, A.P. Hill, B.
Martinac
Channels 11 (3), 209-223
|
| 2016 |
Structural and functional effect of an oscillating electric field on
the Dopamine-D3 receptor: A molecular dynamics simulation study
Z Fallah, Y Jamali, H Rafii-Tabar
PloS one 11 (11), e0166412
|
| 2016 |
The combined effect of hydrophobic mismatch and bilayer local bending
on the regulation of mechanosensitive ion channels
O Bavi, M Vossoughi, R Naghdabadi, Y Jamali
PloS one 11 (3), e0150578
|
| 2016 |
Influence of Global and Local Membrane Curvature on Mechanosensitive
Ion Channels: A Finite Element Approach
O Bavi, CD Cox, M Vossoughi, R Naghdabadi, Y Jamali, B Martinac
Membranes 6 (1)
|
| 2015 |
WCOACH: protein complex prediction in weighted PPI networks
M Kouhsar, F Zare-Mirakabad, Y Jamali
Genes & genetic systems 90 (5), 317-324
|
| 2015 |
Multi-scale simulation of carbon nanotubes interactions with cell membrane:
DFT calculations and molecular dynamic simulation
SH Tabari, Y Jamali, R Poursalehi
Procedia Materials Science 11, 423-427
|
| 2014 |
The effect of local bending on gating of MscL using a representative
volume element and finite element simulation
O Bavi, M Vossoughi, R Naghdabadi, Y Jamali
Channels 8 (4), 344-349
|
| 2013 |
An agent based model of integrin clustering: Exploring the role of ligand
clustering, integrin homo-oligomerization, integrin?ligand affinity,
membrane crowdedness and ligand ?
Y Jamali, T Jamali, MRK Mofrad
Journal of Computational Physics 244, 264-278
|
| 2011 |
Accounting for diffusion in agent based models of reaction-diffusion
systems with application to cytoskeletal diffusion
M Azimi, Y Jamali, MRK Mofrad
PLoS One 6 (9), e25306
|
| 2011 |
Computational modeling of a rotary nanopump
A Lohrasebi, Y Jamali
Journal of Molecular Graphics and Modelling 29 (8), 1025-1029
|
| 2011 |
Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained
model for the functional state of the nuclear pore complex
R Moussavi-Baygi, Y Jamali, R Karimi, MRK Mofrad
PLoS computational biology 7 (6), e1002049
|
| 2011 |
Biophysical coarse-grained modeling provides insights into transport
through the nuclear pore complex
R Moussavi-Baygi, Y Jamali, R Karimi, MRK Mofrad
Biophysical journal 100 (6), 1410-1419
|
| 2011 |
Nuclear pore complex: biochemistry and biophysics of nucleocytoplasmic
transport in health and disease
T Jamali, Y Jamali, M Mehrbod, MRK Mofrad
International review of cell and molecular biology 287, 233-286
|
| 2010 |
A sub-cellular viscoelastic model for cell population mechanics
Y Jamali, M Azimi, MRK Mofrad
PLoS One 5 (8), e12097
|
| 2010 |
Modeling Spatial Distribution of Intracellular Organelles by Molecular
Motors
F Moayed, F Naeimpoor, Y Jamali
Journal of Chemical and Petroleum Engineering 43 (2)
|
| 2010 |
Computational modeling of the collective stochastic motion of kinesin
nano motors
Y Jamali, ME Foulaadvand, H Rafii-Tabar
Journal of Computational and Theoretical Nanoscience 7 (1), 146-152
|
| 2008 |
Modeling the effect of external electric field and current on the stochastic
dynamics of ATPase nano-biomolecular motors
A Lohrasebi, Y Jamali, H Rafii-Tabar
Physica A: Statistical Mechanics and its Applications 387 (22),
5466-5476
|
| 2007 |
Computational modelling of the stochastic dynamics of kinesin biomolecular
motors
Y Jamali, A Lohrasebi, H Rafii-Tabar
Physica A: Statistical Mechanics and its Applications 381, 239-254
|
| |
The effect of a gain of function mutant (G22N) on the mechanical properties
of TM1 helix in MscL: A Steered Molecular Dynamic study
M Mousaei, O Bavi, Y Jamali, MR Ejtehadi
|
| |
Investigation of gating mechanisms of mechanosensitive ion channels
using continuum Mechanics
O Bavia, M Vossoughia, R Naghdabadia, N Bavid, Y Jamalie
|
